Polypeptide MELO3C005694P1

Accession: MELO3C005694P1

Name: MELO3C005694P1

Description: Similar to DNA repair helicase XPB1 (Arabidopsis thaliana) (uniprot_sprot:sp|Q38861|XPB1_ARATH)

Sequence:

>MELO3C005694P1 Similar to DNA repair helicase XPB1 (Arabidopsis thaliana) (uniprot_sprot:sp|Q38861|XPB1_ARATH)
MGHGDRGRPSKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRNGDKEVGKRDFSKLELKPDHANRPLWACADGRIFLETFS
PLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVL
KKNRYLVESPFPEVLQKLLKDEVISRARIIPEDSGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAS
RIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE
WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKI
LEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTD
TQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSV
GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFT*

Download fasta sequence.

Properties

These properties come from blast2go analysis


molecular_function: DNA binding, ATP-dependent DNA helicase activity, ATP binding.

biological_process: nucleotide-excision repair.

These properties come from reactome analysis


REACTOME_PATHWAY: RNA Polymerase II Transcription (REACT_99228), Global Genomic NER (GG-NER) (REACT_88568), Dual incision reaction in TC-NER (REACT_109190), Dual incision reaction in GG-NER (REACT_90961), Formation of the Early Elongation Complex (REACT_101279), mRNA Capping (REACT_102770), RNA Polymerase I Transcription (REACT_110625), Dual incision reaction in GG-NER (REACT_311), RNA Polymerase II Transcription Pre-Initiation And Promoter Opening (REACT_1655), Formation of incision complex in GG-NER (REACT_257), Nucleotide Excision Repair (REACT_96106), Formation of transcription-coupled NER (TC-NER) repair complex (REACT_1941), Formation and Maturation of mRNA Transcript (REACT_77979), RNA Polymerase II Transcription Initiation And Promoter Clearance (REACT_34355), RNA Polymerase II Transcription Elongation (REACT_87946), RNA Pol II CTD phosphorylation and interaction with CE (REACT_90040), RNA Polymerase I Transcription (REACT_1309), RNA Polymerase II HIV-1 Promoter Escape (REACT_6253), Formation of the Early Elongation Complex (REACT_846), HIV Life Cycle (REACT_6256), RNA Polymerase I Promoter Clearance (REACT_52895), Formation of HIV-1 elongation complex in the absence of HIV-1 Tat (REACT_22201), Nucleotide Excision Repair (REACT_84438), RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription (REACT_102763), Transcription-coupled NER (TC-NER) (REACT_29182), Transcription (REACT_1788), mRNA Capping (REACT_1470), RNA Polymerase I Chain Elongation (REACT_2204), RNA Polymerase I Chain Elongation (REACT_86256), Global Genomic NER (GG-NER) (REACT_92144), RNA Pol II CTD phosphorylation and interaction with CE (REACT_30624), Transcription-coupled NER (TC-NER) (REACT_87141), RNA Polymerase I Promoter Escape (REACT_94173), RNA Polymerase II Pre-transcription Events (REACT_82727), RNA Polymerase II Transcription Elongation (REACT_92836), RNA Polymerase I Promoter Clearance (REACT_1974), Formation of the HIV-1 Early Elongation Complex (REACT_6319), RNA Polymerase II Promoter Escape (REACT_81662), RNA Polymerase II Promoter Escape (REACT_2089), RNA Polymerase I Transcription Termination (REACT_1074), Dual incision reaction in GG-NER (REACT_31322), RNA Polymerase II Transcription Initiation And Promoter Clearance (REACT_109232), RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription (REACT_21352), Transcription (REACT_93622), RNA Pol II CTD phosphorylation and interaction with CE (REACT_33716), Nucleotide Excision Repair (REACT_88933), mRNA Capping (REACT_93735), RNA Polymerase II Transcription Elongation (REACT_81750), RNA Polymerase II Promoter Escape (REACT_107789), RNA Polymerase II Transcription (REACT_97471), mRNA Processing (REACT_109337), Dual incision reaction in GG-NER (REACT_96787), RNA Polymerase II Transcription (REACT_1366), RNA Polymerase II Pre-transcription Events (REACT_91707), Global Genomic NER (GG-NER) (REACT_2253), DNA Repair (REACT_91442), RNA Polymerase I Promoter Escape (REACT_1913), mRNA Processing (REACT_1675), RNA Polymerase II Transcription Initiation And Promoter Clearance (REACT_85257), Formation of RNA Pol II elongation complex (REACT_1845), Transcription of the HIV genome (REACT_6233), mRNA Capping (REACT_85562), RNA Pol II CTD phosphorylation and interaction with CE (REACT_6237), RNA Polymerase II Transcription Pre-Initiation And Promoter Opening (REACT_87559), HIV-1 Transcription Initiation (REACT_6332), RNA Pol II CTD phosphorylation and interaction with CE (REACT_975), Formation and Maturation of mRNA Transcript (REACT_92291), mRNA Processing (REACT_80866), Formation and Maturation of mRNA Transcript (REACT_32779), Formation of the Early Elongation Complex (REACT_97522), DNA Repair (REACT_216), RNA Polymerase I Chain Elongation (REACT_100733), Gene Expression (REACT_91657), RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription (REACT_33462), HIV Infection (REACT_6185), RNA Polymerase II Transcription Initiation (REACT_1851), Gene Expression (REACT_108313), RNA Polymerase II Pre-transcription Events (REACT_22107), Transcription (REACT_34268), Formation of incision complex in GG-NER (REACT_82554), RNA Polymerase I Promoter Escape (REACT_78359), Transcription-coupled NER (TC-NER) (REACT_29721), Nucleotide Excision Repair (REACT_106982), Formation of HIV-1 elongation complex containing HIV-1 Tat (REACT_6346), Gene Expression (REACT_98256), RNA Polymerase II Transcription Initiation (REACT_88340), RNA Polymerase II Transcription Elongation (REACT_107633), Gene Expression (REACT_71), Dual incision reaction in TC-NER (REACT_81556), Formation of incision complex in GG-NER (REACT_83576), RNA Polymerase II Promoter Escape (REACT_32829), Global Genomic NER (GG-NER) (REACT_32270), Transcription (REACT_100899), RNA Polymerase II Pre-transcription Events (REACT_99660), Transcription (REACT_87991), Dual incision reaction in GG-NER (REACT_91383), RNA Pol II CTD phosphorylation and interaction with CE (REACT_28314), mRNA Processing (REACT_29019), RNA Polymerase II Transcription (REACT_99950), RNA Polymerase I Transcription Initiation (REACT_953), Nucleotide Excision Repair (REACT_1826), Formation of incision complex in GG-NER (REACT_84881), DNA Repair (REACT_107446), mRNA Capping (REACT_85081), Late Phase of HIV Life Cycle (REACT_6361), RNA Polymerase I Transcription (REACT_30029), RNA Polymerase II Transcription Pre-Initiation And Promoter Opening (REACT_79444), Gene Expression (REACT_105649), Global Genomic NER (GG-NER) (REACT_88746), DNA Repair (REACT_93704), Formation of the Early Elongation Complex (REACT_99528), RNA Polymerase II Transcription Initiation And Promoter Clearance (REACT_34737), Dual incision reaction in TC-NER (REACT_2222), Transcription-coupled NER (TC-NER) (REACT_1628), RNA Polymerase II Pre-transcription Events (REACT_82104), RNA Polymerase II Transcription Initiation (REACT_87429), Formation of the Early Elongation Complex (REACT_29380), Tat-mediated elongation of the HIV-1 transcript (REACT_6162), Formation and Maturation of mRNA Transcript (REACT_2039), RNA Polymerase II Transcription (REACT_106213), RNA Polymerase II Promoter Escape (REACT_109274), RNA Polymerase II Transcription Pre-Initiation And Promoter Opening (REACT_98915), RNA Polymerase I Promoter Clearance (REACT_80486), RNA Polymerase II Transcription Elongation (REACT_833), RNA Polymerase II Transcription Initiation (REACT_104036), Dual incision reaction in TC-NER (REACT_30923), mRNA Processing (REACT_90209), DNA Repair (REACT_88201), Formation and Maturation of mRNA Transcript (REACT_96378), RNA Polymerase II Transcription Pre-Initiation And Promoter Opening (REACT_83749), Dual incision reaction in TC-NER (REACT_94657), RNA Polymerase II Transcription Initiation (REACT_104646), Transcription-coupled NER (TC-NER) (REACT_96116), RNA Polymerase II Transcription Initiation And Promoter Clearance (REACT_834), HIV-1 Transcription Elongation (REACT_6274).

REACTOME_REACTION: RNA Polymerase II Promoter Opening: First Transition (REACT_29850), Phosphorylation (Ser5) of RNA pol II CTD (REACT_31984), 5-incision of DNA by ERCC1-XPF in GG-NER (REACT_1311), Hypophosphorylation of RNA Pol II CTD by FCP1P protein (REACT_1251), RNA Polymerase II Promoter Opening: First Transition (REACT_80107), Abortive Initiation After Second Transition (REACT_1793), Abortive initiation after formation of the first phosphodiester bond (REACT_32630), Formation of the closed pre-initiation complex (REACT_82855), Nucleophillic Attack by 3-hydroxyl Oxygen of nascent transcript on the Alpha Phosphate of NTP (REACT_1467), 3- incision of DNA by XPG in GG-NER (REACT_1124), Addition of nucleotides 10 and 11 on the growing transcript: Third Transition (REACT_1082), Phosphorylation (Ser5) of RNA pol II CTD (REACT_90675), Abortive initiation after formation of the first phosphodiester bond (REACT_653), Extrusion of 5-end of 30 nt long transcript through the pore in Pol II complex (REACT_29457), Formation of the CE:GMP intermediate complex (REACT_79193), Activation of GT (REACT_103913), SPT5 subunit of Pol II binds the RNA triphosphatase (RTP) (REACT_79829), Abortive HIV-1 Initiation After Second Transition (REACT_6265), Capping complex formation (REACT_32400), Transfer of GMP from the capping enzyme GT site to 5-end of mRNA (REACT_95548), Extrusion of 5-end of 30 nt long HIV-1 transcript through the pore in Pol II complex (REACT_6148), Formation of the closed pre-initiation complex (REACT_91116), 3- incision of DNA by XPG in GG-NER (REACT_80628), Fall Back to Closed Pre-initiation Complex (REACT_98220), Formation of the CE:GMP intermediate complex (REACT_90910), Methylation of GMP-cap by RNA Methyltransferase (REACT_97945), Nucleophillic Attack by 3-hydroxyl Oxygen of nascent transcript on the Alpha Phosphate of NTP (REACT_83079), Elongation of pre-rRNA transcript (REACT_99037), Transfer of GMP from the capping enzyme GT site to 5-end of mRNA (REACT_102473), Nucleophillic Attack by 3-hydroxyl Oxygen of nascent transcript on the Alpha Phosphate of NTP (REACT_28192), NTP Binds Active Site of RNA Polymerase II (REACT_84849), Methylation of GMP-cap by RNA Methyltransferase (REACT_404), RNA Polymerase II Promoter Opening: First Transition (REACT_94679), Binding of ERCC1-XPF to preincision complex (REACT_2163), Formation of the closed pre-initiation complex (REACT_632), Dissociation of transcript with 5-GMP from GT (REACT_30543), Addition of nucleotides 10 and 11 on the growing transcript: Third Transition (REACT_95240), Loss of Rrn3 from RNA Polymerase I promoter escape complex (REACT_92972), Formation of the closed pre-initiation complex (REACT_83351), Elongation of pre-rRNA transcript (REACT_872), Addition of nucleotides between position +11 and +30 on HIV-1 transcript (REACT_6240), Dissociation of transcript with 5-GMP from GT (REACT_101219), Nucleophillic Attack by 3-hydroxyl Oxygen of nascent transcript on the Alpha Phosphate of NTP (REACT_88546), Addition of nucleotides leads to transcript elongation (REACT_107064), Transfer of GMP from the capping enzyme GT site to 5-end of mRNA (REACT_97660), Recruitment of repair factors to form preincision complex (REACT_1492), NTP Binds Active Site of RNA Polymerase II (REACT_86985), Hydrolysis of the 5-end of the nascent transcript by the capping enzyme (REACT_81068), 3 incision of the lesioned strand of DNA in TC-NER (REACT_80298), Extrusion of 5-end of 30 nt long transcript through the pore in Pol II complex (REACT_1567), Displacement of stalled Pol II from the lesion site (REACT_82387), Newly Formed Phosphodiester Bond Stabilized and PPi Released (REACT_86649), Fall Back to Closed Pre-initiation Complex (REACT_1702), Dissociation of transcript with 5-GMP from GT (REACT_106203), Fall Back to Closed Pre-initiation Complex (REACT_92728), Transfer of GMP from the capping enzyme GT site to 5-end of mRNA (REACT_1968), Addition of Nucleotides 5 through 9 on the growing Transcript (REACT_100344), Binding of ERCC1-XPF to preincision complex (REACT_96915), Hydrolysis of the 5-end of the nascent transcript by the capping enzyme (REACT_1368), Hypophosphorylation of RNA Pol II CTD by FCP1P protein (REACT_33423), Recruitment of elongation factors to form HIV-1 elongation complex (REACT_6358), NTP Binds Active Site of RNA Polymerase II (REACT_80520), Addition of nucleotides between position +11 and +30 (REACT_77879), Nucleophillic Attack by 3-hydroxyl Oxygen of nascent transcript on the Alpha Phosphate of NTP (REACT_28433), Formation of open bubble structure in DNA by helicases (REACT_89030), Capping complex formation (REACT_85029), Extrusion of 5-end of 30 nt long transcript through the pore in Pol II complex (REACT_108808), Displacement of stalled Pol II from the lesion site (REACT_1284), SPT5 subunit of Pol II binds the RNA triphosphatase (RTP) (REACT_423), RNA Polymerase II Promoter Opening: First Transition (REACT_1844), Hypophosphorylation of RNA Pol II CTD by FCP1P protein (REACT_77594), 5 incision leading to excision of DNA fragment with lesion in TC-NER (REACT_94592), Abortive Initiation After Second Transition (REACT_108713), Formation of the closed pre-initiation complex (REACT_98407), Fall Back to Closed Pre-initiation Complex (REACT_31744), Addition of Nucleotides 5 through 9 on the growing Transcript (REACT_581), Newly formed phosphodiester bond stabilized and PPi released (REACT_6333), HIV-1 Promoter Opening: First Transition (REACT_6134), SPT5 subunit of Pol II binds the RNA triphosphatase (RTP) (REACT_102861), 5 incision leading to excision of DNA fragment with lesion in TC-NER (REACT_31162), RNA Polymerase II Promoter Opening: First Transition (REACT_89694), Hypophosphorylation of RNA Pol II CTD by FCP1P protein (REACT_86293), 3 incision of the lesioned strand of DNA in TC-NER (REACT_106756), SPT5 subunit of Pol II binds the RNA triphosphatase (RTP) (REACT_103086), Newly Formed Phosphodiester Bond Stabilized and PPi Released (REACT_1055), RNA Polymerase II CTD (phosphorylated) binds to CE (REACT_88439), Activation of GT (REACT_893), PTRF Binds the Polymerase I Transcription Complex/Nascent Pre rRNA Complex paused at the TTF-I:Sal Box (REACT_211), Binding of ERCC1-XPF to preincision complex (REACT_99635), Capping complex formation (REACT_86608), Displacement of stalled Pol II from the lesion site (REACT_87615), NTP Binds Active Site of RNA Polymerase II (REACT_106132), Addition of nucleotides between position +11 and +30 (REACT_28303), 3 incision of the lesioned strand of DNA in TC-NER (REACT_109157), Dissociation of PTRF:Polymerase I/Nascent Pre rRNA Complex:TTF-I:Sal Box (REACT_513), 3 incision of the lesioned strand of DNA in TC-NER (REACT_92741), NTP Binds Active Site of RNA Polymerase II (REACT_1160), Addition of nucleotides leads to transcript elongation (REACT_751), RNA Polymerase II CTD (phosphorylated) binds to CE (REACT_6220), NTP binds active site of RNA Polymerase II in HIV-1 open pre-initiation complex (REACT_6349), Recruitment of elongation factors to form elongation complex (REACT_949), Abortive HIV-1 initiation after formation of the first phosphodiester bond (REACT_6226), Extrusion of 5-end of 30 nt long transcript through the pore in Pol II complex (REACT_87062), Methylation of GMP-cap by RNA Methyltransferase (REACT_93915), Transfer of GMP from the capping enzyme GT site to 5-end of mRNA (REACT_77279), Methylation of GMP-cap by RNA Methyltransferase (REACT_34170), Activation of GT (REACT_6298), Phosphorylation (Ser5) of RNA pol II CTD (REACT_91157), 3- incision of DNA by XPG in GG-NER (REACT_80387), SPT5 subunit of Pol II binds the RNA triphosphatase (RTP) (REACT_6295), Formation of open bubble structure in DNA by helicases (REACT_95993), Hypophosphorylation of RNA Pol II CTD by FCP1P protein (REACT_79518), Addition of nucleotides between position +11 and +30 (REACT_209), Activation of GT (REACT_84234), RNA Polymerase II CTD (phosphorylated) binds to CE (REACT_2233), Hydrolysis of the 5-end of the nascent transcript by the capping enzyme (REACT_78922), Dissociation of transcript with 5-GMP from GT (REACT_90647), Formation of the CE:GMP intermediate complex (REACT_1580), 5 incision leading to excision of DNA fragment with lesion in TC-NER (REACT_104620), 3 incision of the lesioned strand of DNA in TC-NER (REACT_1274), 3- incision of DNA by XPG in GG-NER (REACT_92894), Hydrolysis of the 5-end of the nascent transcript by the capping enzyme (REACT_85239), Assembly of repair proteins at the site of Pol II blockage (REACT_1584), Formation of open bubble structure in DNA by helicases (REACT_78462), Hydrolysis of the 5-end of the nascent transcript by the capping enzyme (REACT_29917), Fall Back to Closed Pre-initiation Complex (REACT_6211), Addition of nucleotides between position +11 and +30 (REACT_29713), 5 incision leading to excision of DNA fragment with lesion in TC-NER (REACT_811), Abortive Initiation After Second Transition (REACT_103184), 5 incision leading to excision of DNA fragment with lesion in TC-NER (REACT_101250), Abortive Initiation After Second Transition (REACT_103180), Addition of nucleotides leads to transcript elongation (REACT_100466), Formation of open bubble structure in DNA by helicases (REACT_1033), 3- incision of DNA by XPG in GG-NER (REACT_100654), Capping complex formation (REACT_2186), Nucleophillic attack by 3-hydroxyl oxygen of nascent HIV-1 transcript on the Alpha phosphate of NTP (REACT_6285), Formation of the CE:GMP intermediate complex (REACT_92552), Polymerase I Transcription Complex/Nascent Pre rRNA Complex pauses at the TTF-I:Sal Box (REACT_2228), Loss of Rrn3 from RNA Polymerase I promoter escape complex (REACT_373), RNA Polymerase II CTD (phosphorylated) binds to CE (REACT_96127), Activation of GT (REACT_96305), Phosphorylation (Ser5) of RNA pol II CTD (REACT_1185), Displacement of stalled Pol II from the lesion site (REACT_28718), Displacement of stalled Pol II from the lesion site (REACT_108076), Addition of nucleotides 10 and 11 on the growing HIV-1 transcript: Third Transition (REACT_6208), Loss of Rrn3 from RNA Polymerase I promoter escape complex (REACT_100182), Phosphorylation (Ser5) of RNA pol II CTD (REACT_77857), Formation of the CE:GMP intermediate complex (REACT_101635), Abortive Initiation Before Second Transition (REACT_106763), Phosphorylation (Ser5) of RNA pol II CTD (REACT_6234), Abortive HIV-1 Initiation Before Second Transition (REACT_6203), Elongation of pre-rRNA transcript (REACT_102951), Fall Back to Closed Pre-initiation Complex (REACT_100253), Hypophosphorylation of RNA Pol II CTD by FCP1P protein (REACT_6206), Addition of nucleotides 10 and 11 on the growing transcript: Third Transition (REACT_105022), Addition of nucleotides 10 and 11 on the growing transcript: Third Transition (REACT_30335), Newly Formed Phosphodiester Bond Stabilized and PPi Released (REACT_103987), Newly Formed Phosphodiester Bond Stabilized and PPi Released (REACT_100578), Extrusion of 5-end of 30 nt long transcript through the pore in Pol II complex (REACT_33504), Addition of nucleotides 10 and 11 on the growing transcript: Third Transition (REACT_88577), Activation of GT (REACT_106797), Capping complex formation (REACT_91663), RNA Polymerase II CTD (phosphorylated) binds to CE (REACT_109877), Recruitment of Active RNA Polymerase I to SL1:phos.UBF-1:rDNA Promoter (REACT_139), Binding of ERCC1-XPF to preincision complex (REACT_105931), SPT5 subunit of Pol II binds the RNA triphosphatase (RTP) (REACT_108201), Addition of nucleotides between position +11 and +30 (REACT_90076), Addition of nucleotides 5 through 9 on the growing HIV-1 transcript (REACT_6172), Newly Formed Phosphodiester Bond Stabilized and PPi Released (REACT_86674), Addition of nucleotides leads to HIV-1 transcript elongation (REACT_6278), Recruitment of elongation factors to form HIV-1 elongation complex (REACT_6275), Abortive Initiation Before Second Transition (REACT_543), Dissociation of transcript with 5-GMP from GT (REACT_703).

REACTOME_COMPLEX: HIV-1 transcription complex containing 3 nucleotide long transcript [nucleoplasm] (REACT_6450), HIV-1 initiation complex [nucleoplasm] (REACT_6518), HIV-1 initiation complex with phosphodiester-PPi intermediate [nucleoplasm] (REACT_6680), RNA Pol II with phosphorylated CTD: CE complex [nucleoplasm] (REACT_6521), Capping complex (intermediate) [nucleoplasm] (REACT_3580), Pol II Promoter Escape Complex [nucleoplasm] (REACT_3851), Capping complex (hydrolyzed) [nucleoplasm] (REACT_4969), HIV-1 transcription complex containing transcript to +30 [nucleoplasm] (REACT_6514), HIV-1 transcription complex containing extruded transcript to +30 [nucleoplasm] (REACT_6516), PTRF:Polymerase I/Nascent Pre rRNA Complex:TTF-I:Sal Box [nucleoplasm] (REACT_4203), RNA Pol II with phosphorylated CTD: CE complex with activated GT [nucleoplasm] (REACT_3171), pol II transcription complex containing 9 nucleotide long transcript [nucleoplasm] (REACT_5212), HIV-1 closed pre-initiation complex [nucleoplasm] (REACT_6553), RNA Polymerase I:rRNATranscript:TTF-1:Sal Box Complex [nucleoplasm] (REACT_2713), Pol II transcription complex containing transcript to +30 [nucleoplasm] (REACT_4399), TFIIH [nucleoplasm] (REACT_3832), HIV-1 elongation complex containing Tat [nucleoplasm] (REACT_6611), HIV-1 transcription complex [nucleoplasm] (REACT_6433), CE:Pol II CTD:Spt5 complex [nucleoplasm] (REACT_2332), Incision complex with 3-incised damaged DNA [nucleoplasm] (REACT_5099), RNA Pol II with phosphorylated CTD: CE complex with activated GT [nucleoplasm] (REACT_6659), pol II transcription complex containing 4 nucleotide long transcript [nucleoplasm] (REACT_4148), RNA Polymearse II:NTP:TFIIF complex [nucleoplasm] (REACT_4655), Capping complex (GpppN..) [nucleoplasm] (REACT_2312), RNA Polymerase I promoter escape complex [nucleoplasm] (REACT_5158), HIV-1 Promoter Escape Complex [nucleoplasm] (REACT_6417), pol II closed pre-initiation complex [nucleoplasm] (REACT_5734), HIV-1 transcription complex containing 4 nucleotide long transcript [nucleoplasm] (REACT_6640), Elongation complex [nucleoplasm] (REACT_3511), pol II transcription complex containing 11 nucleotide long transcript [nucleoplasm] (REACT_3183), pre-incision complex with open DNA bubble [nucleoplasm] (REACT_5689), Transcription-coupled (TC) repair complex [nucleoplasm] (REACT_3969), pre-incision complex in GG-NER [nucleoplasm] (REACT_5795), HIV-1 elongation complex [nucleoplasm] (REACT_6501), RNA Polymerase I Transcription Initiation complex [nucleoplasm] (REACT_4081), incision complex for GG-NER [nucleoplasm] (REACT_5159), HIV-1 transcription complex containing 9 nucleotide long transcript [nucleoplasm] (REACT_6561), HIV-1 transcription complex containing 4-9 nucleotide long transcript [nucleoplasm] (REACT_6563), Pol II Initiation complex with phosphodiester-PPi intermediate [nucleoplasm] (REACT_2410), HIV-1 open pre-initiation complex [nucleoplasm] (REACT_6605), Capping complex (initial) [nucleoplasm] (REACT_4555), RNA Pol II with phosphorylated CTD: CE complex [nucleoplasm] (REACT_2371), HIV-1 transcription complex containing 11 nucleotide long transcript [nucleoplasm] (REACT_6664), HIV-1 transcription complex with (ser5) phosphorylated CTD containing extruded transcript to +30 [nucleoplasm] (REACT_6638), Pol II initiation complex [nucleoplasm] (REACT_5487), pol II transcription complex containing 4-9 nucleotide long transcript [nucleoplasm] (REACT_3928), Pol II transcription complex with (ser5) phosphorylated CTD containing extruded transcript to +30 [nucleoplasm] (REACT_2595), Pol II transcription complex containing extruded transcript to +30 [nucleoplasm] (REACT_4335), CE:Pol II CTD:Spt5 complex [nucleoplasm] (REACT_6491), pol II transcription complex [nucleoplasm] (REACT_2954), Covalent CE:GMP intermediate complex [nucleoplasm] (REACT_2774), pol II open pre-initiation complex [nucleoplasm] (REACT_4930), Capping complex (with freed 5- GMP) [nucleoplasm] (REACT_4741), pol II transcription complex containing 3 Nucleotide long transcript [nucleoplasm] (REACT_3251).

biological_process: nucleotide-excision repair, nucleotide-excision repair, DNA damage removal, transcription-coupled nucleotide-excision repair, transcription initiation from RNA polymerase I promoter, transcription elongation from RNA polymerase I promoter, termination of RNA polymerase I transcription, transcription initiation from RNA polymerase II promoter, transcription elongation from RNA polymerase II promoter, mRNA capping, viral reproduction, positive regulation of viral transcription, gene expression, DNA repair, viral transcription, transcription from RNA polymerase I promoter, transcription from RNA polymerase II promoter.

These properties come from phylome analysis


molecular_function: DNA binding, ATP-dependent DNA helicase activity, ATP binding, damaged DNA binding, protein binding, protein C-terminus binding, transcription factor binding, general RNA polymerase II transcription factor activity, ATPase activity, uncoupled, 3'-5' DNA helicase activity, protein N-terminus binding.

cellular_component: nucleotide-excision repair factor 3 complex, core TFIIH complex, nucleus, holo TFIIH complex.

biological_process: nucleotide-excision repair, regulation of mitotic recombination, cell cycle checkpoint, regulation of alternative nuclear mRNA splicing, via spliceosome, nucleotide-excision repair, DNA duplex unwinding, nucleotide-excision repair, DNA damage removal, DNA topological change, transcription-coupled nucleotide-excision repair, transcription initiation from RNA polymerase I promoter, transcription elongation from RNA polymerase I promoter, termination of RNA polymerase I transcription, transcription initiation from RNA polymerase II promoter, transcription elongation from RNA polymerase II promoter, mRNA capping, induction of apoptosis, response to oxidative stress, protein localization, adult locomotory behavior, response to UV, embryo development ending in birth or egg hatching, regulation of transposition, RNA-mediated, viral reproduction, poly(A)+ mRNA export from nucleus, general transcription from RNA polymerase II promoter, nucleotide-excision repair, DNA incision, hair cell differentiation, interspecies interaction between organisms, positive regulation of transcription from RNA polymerase II promoter, positive regulation of viral transcription, phosphorylation of RNA polymerase II C-terminal domain.

These properties come from kegg analysis


KEGG_ORTHOLOGS: DNA excision repair protein ERCC-3 [EC:3.6.4.12] (K10843).

molecular_function: 3'-5' DNA helicase activity.

Locations

Located in CM3.5_scaffold00005 from 7055591 to 7062239.

This polypeptide in other databases

In PhylomeDB is Phy003A2F3_CUCME .

Related features