Protein coding gene MELO3C002045

Accession: MELO3C002045

Name: MELO3C002045

Description: Similar to Cleavage stimulation factor subunit 1 (Homo sapiens) (uniprot_sprot:sp|Q05048|CSTF1_HUMAN)

Properties

These properties come from blast2go analysis


molecular_function: protein binding, nucleotide binding.

cellular_component: CUL4 RING ubiquitin ligase complex.

biological_process: RNA splicing, mRNA processing.

These properties come from reactome analysis


REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Recruitment of CstF to the CPSF Bound Pre-mRNA (REACT_99621), Recruitment of CstF to the CPSF Bound Pre-mRNA (REACT_95805), Cleavage and polyadenylation of Intronless Pre-mRNA (REACT_108114), Cleavage of mRNA at the 3-end (REACT_1914), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Binding of Cleavage factors and Poly(A)Polymerase to the CstF:CPSF:Pre-mRNA Complex (REACT_92783), Formation of the Cleavage and Polyadenylation Complex (REACT_96214), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), Cleavage of Intronless Pre-mRNA at 3-end (REACT_460), Formation of the Cleavage and Polyadenylation Complex (REACT_1184), Cleavage of Intronless Pre-mRNA at 3-end (REACT_101599), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Binding of Cleavage factors and Poly(A)Polymerase to the CstF:CPSF:Pre-mRNA Complex (REACT_1724), Recruitment of CstF to the CPSF Bound Pre-mRNA (REACT_87712), Formation of an intermediate Spliceosomal C complex (REACT_91565), Recruitment of CstF to the CPSF Bound Pre-mRNA (REACT_336), Formation of the active Spliceosomal C complex (REACT_63591), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Cleavage and polyadenylation of Intronless Pre-mRNA (REACT_45), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).

biological_process: mRNA 3'-end processing, transcription from RNA polymerase II promoter, gene expression, termination of RNA polymerase II transcription, nuclear mRNA splicing, via spliceosome, RNA splicing, mRNA processing.

REACTOME_COMPLEX: Cleavage and Polyadenylation Complex [nucleoplasm] (REACT_3144), intronless pre-mRNA cleavage complex [nucleoplasm] (REACT_3895), Ligated exon containing complex [nucleoplasm] (REACT_5472), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), Exon Junction Complex [nucleoplasm] (REACT_2984), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), CstF:CPSF:capped intronless pre-mRNA:CBC complex [nucleoplasm] (REACT_3025), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), CstF [nucleoplasm] (REACT_3503).

REACTOME_PATHWAY: mRNA Splicing (REACT_94469), mRNA Processing (REACT_94551), Cleavage of Growing Transcript in the Termination Region (REACT_387), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Processing (REACT_29019), Processing of Intronless Pre-mRNAs (REACT_1096), Post-Elongation Processing of the Transcript (REACT_92630), mRNA 3-end processing (REACT_1849), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), Formation and Maturation of mRNA Transcript (REACT_85219), mRNA Processing (REACT_1675), Processing of Intronless Pre-mRNAs (REACT_78262), Processing of Intronless Pre-mRNAs (REACT_90038), mRNA Splicing (REACT_1735), Gene Expression (REACT_85241), Transcription (REACT_1788), mRNA Splicing - Major Pathway (REACT_467), Processing of Capped Intronless Pre-mRNA (REACT_90366), Processing of Capped Intronless Pre-mRNA (REACT_1768), Gene Expression (REACT_71), Post-Elongation Processing of Intronless pre-mRNA (REACT_86562), RNA Polymerase II Transcription (REACT_1366), Post-Elongation Processing of the Transcript (REACT_78), Post-Elongation Processing of Intronless pre-mRNA (REACT_96668), Processing of Capped Intronless Pre-mRNA (REACT_96661), Post-Elongation Processing of Intronless pre-mRNA (REACT_717), Post-Elongation Processing of the Transcript (REACT_91794), Post-Elongation Processing of Intron-Containing pre-mRNA (REACT_397), RNA Polymerase II Transcription (REACT_106213), Formation and Maturation of mRNA Transcript (REACT_2039), Transcription (REACT_34268), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), Post-Elongation Processing of the Transcript (REACT_108925), RNA Polymerase II Transcription Termination (REACT_53836), mRNA Splicing - Major Pathway (REACT_91611), Post-Elongation Processing of Intronless pre-mRNA (REACT_82898), RNA Polymerase II Transcription Termination (REACT_894), Cleavage of Growing Transcript in the Termination Region (REACT_33730), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), Processing of Capped Intronless Pre-mRNA (REACT_33642), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866), Processing of Intronless Pre-mRNAs (REACT_100138).

These properties come from phylome analysis


molecular_function: general transcriptional repressor activity, RNA binding, protein binding.

cellular_component: transcriptional repressor complex, nucleoplasm, nucleus.

biological_process: oogenesis, negative regulation of vulval development, locomotion, positive regulation of growth rate, growth, nucleosome positioning, embryo development ending in birth or egg hatching, receptor-mediated endocytosis, mRNA cleavage, mRNA polyadenylation, termination of RNA polymerase II transcription, transcription, DNA-dependent, nematode larval development, morphogenesis of an epithelium, gastrulation with mouth forming first, nuclear mRNA splicing, via spliceosome, RNA splicing.

These properties come from kegg analysis


KEGG_PATHWAY: mRNA surveillance pathway (ko03015).

KEGG_ORTHOLOGS: cleavage stimulation factor subunit 1 (K14406).

Locations

Located in CM3.5_scaffold00001 from 861795 to 866456.

Related features