Protein coding gene MELO3C004440
Accession: MELO3C004440
Name: MELO3C004440
Description: Similar to 116 kDa U5 small nuclear ribonucleoprotein component (Gallus gallus) (uniprot_sprot:sp|Q5F3X4|U5S1_CHICK)
Properties
These properties come from blast2go analysis
molecular_function: GTP binding, GTPase activity, translation elongation factor activity.
cellular_component: plasma membrane, cytosol, U5 snRNP, cell wall.
biological_process: nuclear mRNA splicing, via spliceosome.
These properties come from reactome analysis
REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_81825), Formation of AT-AC B Complex (REACT_101559), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Formation of AT-AC C complex (REACT_83124), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Formation of AT-AC C complex (REACT_1615), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81731), Formation of the Spliceosomal B Complex (REACT_90182), Formation of AT-AC C complex (REACT_78819), Formation of AT-AC C complex (REACT_110048), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_99299), Formation of AT-AC C complex (REACT_95722), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_105023), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81096), Formation of the Spliceosomal B Complex (REACT_109266), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_34550), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_77961), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_1494), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Formation of AT-AC B Complex (REACT_90655), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Formation of an intermediate Spliceosomal C complex (REACT_91565), Formation of AT-AC B Complex (REACT_100957), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_2241), Formation of AT-AC B Complex (REACT_93825), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_29379), Formation of the active Spliceosomal C complex (REACT_63591), Formation of the Spliceosomal B Complex (REACT_48), Formation of AT-AC B Complex (REACT_1253), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).
biological_process: gene expression, RNA splicing, nuclear mRNA splicing, via spliceosome.
REACTOME_COMPLEX: ATAC C Complex [nucleoplasm] (REACT_4626), Exon Junction Complex [nucleoplasm] (REACT_2984), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), ATAC C Complex with lariat containing 5-end cleaved mRNA [nucleoplasm] (REACT_5134), Spliceosomal B Complex [nucleoplasm] (REACT_3078), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), U4 ATAC:U5:U6 ATAC Complex [nucleoplasm] (REACT_4539), U4:U5:U6 trisnRNP complex [nucleoplasm] (REACT_5066), U5 snRNP [nucleoplasm] (REACT_2482), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), ATAC B Complex [nucleoplasm] (REACT_5095), intron-containing complex [nucleoplasm] (REACT_3239).
REACTOME_PATHWAY: mRNA Splicing - Major Pathway (REACT_467), Processing of Capped Intron-Containing Pre-mRNA (REACT_31128), mRNA Processing (REACT_94551), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Splicing (REACT_98879), mRNA Processing (REACT_29019), mRNA Splicing - Minor Pathway (REACT_91088), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), Formation and Maturation of mRNA Transcript (REACT_85219), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), Gene Expression (REACT_85241), mRNA Splicing - Minor Pathway (REACT_101135), Formation and Maturation of mRNA Transcript (REACT_92291), Gene Expression (REACT_71), mRNA Splicing (REACT_81581), mRNA Splicing - Minor Pathway (REACT_88186), mRNA Processing (REACT_109337), Processing of Capped Intron-Containing Pre-mRNA (REACT_109442), Formation and Maturation of mRNA Transcript (REACT_2039), mRNA Splicing - Minor Pathway (REACT_101749), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), mRNA Splicing - Minor Pathway (REACT_1753), mRNA Splicing - Major Pathway (REACT_91611), Gene Expression (REACT_91657), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), mRNA Splicing (REACT_94469), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866).
These properties come from phylome analysis
molecular_function: U5 snRNA binding, protein binding, nucleic acid binding, GTP binding, GTPase activity, translation elongation factor activity.
cellular_component: catalytic step 2 spliceosome, precatalytic spliceosome, ribonucleoprotein complex, nuclear speck, Cajal body, cytoplasm, spliceosomal complex, U5 snRNP.
biological_process: striated muscle myosin thick filament assembly, locomotion, growth, molting cycle, collagen and cuticulin-based cuticle, embryo development ending in birth or egg hatching, RNA splicing, mRNA processing, nematode larval development, cytokinesis, spliceosome conformational change to release U4 (or U4atac) and U1 (or U11), generation of catalytic spliceosome for first transesterification step, assembly of spliceosomal tri-snRNP, reproduction, nuclear mRNA splicing, via spliceosome.
These properties come from kegg analysis
KEGG_ORTHOLOGS: 116 kDa U5 small nuclear ribonucleoprotein component (K12852).
