Protein coding gene MELO3C005946

Accession: MELO3C005946

Name: MELO3C005946

Description: Similar to Protein mago nashi homolog (Oryza sativa subsp. japonica) (uniprot_sprot:sp|P49030|MGN_ORYSJ)

Properties

These properties come from reactome analysis


REACTOME_REACTION: Transport of the export-competent complex through the NPC (REACT_100279), Docking of the TAP:EJC Complex with the NPC (REACT_138), SMG1 Phosphorylates UPF1 (Enhanced by Exon Junction Complex) (REACT_75910), UPF1 Binds an mRNP with a Termination Codon Preceding an Exon Junction Complex (REACT_75753), Release from the NPC and Disassembly of the mRNP (REACT_1228), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_92827), mRNA polyadenylation (REACT_1162), Formation of Exon Junction Complex (REACT_774), Recruitment of TAP to the EJC (REACT_53), Transport of the export-competent complex through the NPC (REACT_2104), Release from the NPC and Disassembly of the mRNP (REACT_91579), Cleavage of mRNA at the 3-end (REACT_1914), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).

biological_process: mRNA 3'-end processing, RNA metabolic process, RNA splicing, termination of RNA polymerase II transcription, transcription from RNA polymerase II promoter, gene expression, mRNA metabolic process, mRNA export from nucleus, nuclear mRNA splicing, via spliceosome.

REACTOME_COMPLEX: Magoh-Y14 complex [nucleoplasm] (REACT_5524), Exon Junction:UPF2:UPF3 Complex [cytosol] (REACT_76254), EJC complex [nucleoplasm] (REACT_4104), Export Receptor bound mature mRNA Complex [nucleoplasm] (REACT_2624), Exon Junction Complex [nucleoplasm] (REACT_2984), Export Receptor bound mature mRNA Complex [cytosol] (REACT_2455), Magoh-Y14 complex [cytosol] (REACT_4361), 3 end cleaved, ligated exon containing complex [nucleoplasm] (REACT_3092), SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (REACT_76156), Core Exon Junction Complex (Core EJC) [cytosol] (REACT_76521), Ligated exon containing complex [nucleoplasm] (REACT_5472), 3-polyadenylated, capped mRNA complex [nucleoplasm] (REACT_5827), SMG1:UPF1:EJC:Translated mRNP [cytosol] (REACT_76647), Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (REACT_76510), TAP:3-polyadenylated, capped mRNA complex [nucleoplasm] (REACT_4136), Mature mRNP Complex [cytosol] (REACT_4851), Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (REACT_76275).

REACTOME_PATHWAY: Cleavage of Growing Transcript in the Termination Region (REACT_387), Formation and Maturation of mRNA Transcript (REACT_77979), Nonsense-Mediated Decay (REACT_75886), mRNA Processing (REACT_29019), mRNA 3-end processing (REACT_1849), Nonsense Mediated Decay Enhanced by the Exon Junction Complex (REACT_75822), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), Transcription (REACT_1788), Transport of Mature Transcript to Cytoplasm (REACT_1281), mRNA Splicing - Major Pathway (REACT_467), Gene Expression (REACT_71), Post-Elongation Processing of Intron-Containing pre-mRNA (REACT_397), RNA Polymerase II Transcription (REACT_1366), Transport of Mature mRNA derived from an Intron-Containing Transcript (REACT_1597), Metabolism of mRNA (REACT_20605), Post-Elongation Processing of the Transcript (REACT_78), Formation and Maturation of mRNA Transcript (REACT_2039), Formation and Maturation of mRNA Transcript (REACT_32779), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), mRNA Splicing - Major Pathway (REACT_91611), RNA Polymerase II Transcription Termination (REACT_894), Transport of Mature Transcript to Cytoplasm (REACT_30429), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), Metabolism of RNA (REACT_21257), Gene Expression (REACT_105649), Transport of Mature mRNA derived from an Intron-Containing Transcript (REACT_98338), mRNA Splicing (REACT_94469), mRNA Splicing - Major Pathway (REACT_93740), mRNA Processing (REACT_80866).

These properties come from phylome analysis


molecular_function: protein binding, RNA binding.

cellular_component: catalytic step 2 spliceosome, precatalytic spliceosome, pole plasm, cytoplasm, nucleus.

biological_process: oogenesis, maintenance of pole plasm mRNA location, pole plasm oskar mRNA localization, feminization of hermaphroditic germ-line, locomotion, positive regulation of growth rate, growth, cell differentiation, RNA interference, body morphogenesis, embryo development ending in birth or egg hatching, determination of adult lifespan, protein localization, oocyte microtubule cytoskeleton polarization, regulation of pole plasm oskar mRNA localization, epidermal growth factor receptor signaling pathway, mRNA export from nucleus, nematode larval development, gastrulation with mouth forming first, nuclear mRNA splicing, via spliceosome.

These properties come from blast2go analysis


cellular_component: nucleus.

biological_process: sex determination.

Locations

Located in CM3.5_scaffold00006 from 148352 to 150481.

Related features