Protein coding gene MELO3C008690

Accession: MELO3C008690

Name: MELO3C008690

Description: Similar to Splicing factor 3B subunit 2 (Homo sapiens) (uniprot_sprot:sp|Q13435|SF3B2_HUMAN)

Properties

These properties come from blast2go analysis


molecular_function: metal ion binding, protein binding.

cellular_component: plastid, nucleus.

biological_process: mRNA processing.

These properties come from reactome analysis


REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_81825), Formation of AT-AC B Complex (REACT_101559), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Formation of the Spliceosomal A Complex (REACT_788), Formation of AT-AC C complex (REACT_83124), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Formation of AT-AC C complex (REACT_1615), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81731), Formation of the Spliceosomal B Complex (REACT_90182), Formation of AT-AC C complex (REACT_78819), Formation of AT-AC C complex (REACT_110048), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_99299), Formation of AT-AC C complex (REACT_95722), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_105023), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81096), Formation of the Spliceosomal B Complex (REACT_109266), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), Formation of AT-AC A complex (REACT_864), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_34550), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_77961), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_1494), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Formation of AT-AC B Complex (REACT_90655), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Formation of an intermediate Spliceosomal C complex (REACT_91565), Formation of AT-AC B Complex (REACT_100957), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_2241), Formation of AT-AC B Complex (REACT_93825), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_29379), Formation of the active Spliceosomal C complex (REACT_63591), Formation of the Spliceosomal B Complex (REACT_48), Formation of AT-AC B Complex (REACT_1253), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).

biological_process: gene expression, RNA splicing, nuclear mRNA splicing, via spliceosome.

REACTOME_COMPLEX: ATAC A Complex [nucleoplasm] (REACT_4037), SF3B [nucleoplasm] (REACT_3752), Spliceosomal A Complex [nucleoplasm] (REACT_4512), ATAC C Complex [nucleoplasm] (REACT_4626), Exon Junction Complex [nucleoplasm] (REACT_2984), ATAC C Complex with lariat containing 5-end cleaved mRNA [nucleoplasm] (REACT_5134), U2 snRNP [nucleoplasm] (REACT_3715), Spliceosomal B Complex [nucleoplasm] (REACT_3078), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), ATAC B Complex [nucleoplasm] (REACT_5095), U12 snRNP [nucleoplasm] (REACT_3595), intron-containing complex [nucleoplasm] (REACT_3239).

REACTOME_PATHWAY: mRNA Splicing - Major Pathway (REACT_467), Processing of Capped Intron-Containing Pre-mRNA (REACT_31128), mRNA Processing (REACT_94551), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Splicing (REACT_98879), mRNA Processing (REACT_29019), mRNA Splicing - Minor Pathway (REACT_91088), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), Formation and Maturation of mRNA Transcript (REACT_85219), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), Gene Expression (REACT_85241), mRNA Splicing - Minor Pathway (REACT_101135), Formation and Maturation of mRNA Transcript (REACT_92291), Gene Expression (REACT_71), mRNA Splicing (REACT_81581), mRNA Splicing - Minor Pathway (REACT_88186), mRNA Processing (REACT_109337), Processing of Capped Intron-Containing Pre-mRNA (REACT_109442), Formation and Maturation of mRNA Transcript (REACT_2039), mRNA Splicing - Minor Pathway (REACT_101749), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), mRNA Splicing - Minor Pathway (REACT_1753), mRNA Splicing - Major Pathway (REACT_91611), Gene Expression (REACT_91657), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), mRNA Splicing (REACT_94469), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866).

These properties come from phylome analysis


molecular_function: nucleic acid binding, protein binding.

cellular_component: catalytic step 2 spliceosome, precatalytic spliceosome, U12-type spliceosomal complex, spliceosomal complex, nucleoplasm, nucleus.

biological_process: interspecies interaction between organisms, hermaphrodite genitalia development, locomotion, growth, molting cycle, collagen and cuticulin-based cuticle, embryo development ending in birth or egg hatching, nematode larval development, nuclear mRNA splicing, via spliceosome, mRNA processing.

These properties come from kegg analysis


KEGG_ORTHOLOGS: splicing factor 3B subunit 2 (K12829).

Locations

Located in CM3.5_scaffold00009 from 6059762 to 6069118.

Related features