Protein coding gene MELO3C021974
Accession: MELO3C021974
Name: MELO3C021974
Description: Similar to Polyribonucleotide 5'-hydroxyl-kinase Clp1 (Gallus gallus) (uniprot_sprot:sp|Q5ZJL4|CLP1_CHICK)
Properties
These properties come from blast2go analysis
molecular_function: protein binding, catalytic activity.
cellular_component: nucleus.
biological_process: mRNA processing.
These properties come from reactome analysis
REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Cleavage and polyadenylation of Intronless Pre-mRNA (REACT_108114), Cleavage of mRNA at the 3-end (REACT_1914), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Binding of Cleavage factors and Poly(A)Polymerase to the CstF:CPSF:Pre-mRNA Complex (REACT_92783), Formation of the Cleavage and Polyadenylation Complex (REACT_96214), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), Cleavage of Intronless Pre-mRNA at 3-end (REACT_460), Formation of the Cleavage and Polyadenylation Complex (REACT_1184), Cleavage of Intronless Pre-mRNA at 3-end (REACT_101599), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Binding of Cleavage factors and Poly(A)Polymerase to the CstF:CPSF:Pre-mRNA Complex (REACT_1724), Formation of an intermediate Spliceosomal C complex (REACT_91565), Formation of the active Spliceosomal C complex (REACT_63591), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Cleavage and polyadenylation of Intronless Pre-mRNA (REACT_45), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).
biological_process: transcription from RNA polymerase II promoter, RNA splicing, gene expression, mRNA 3'-end processing, termination of RNA polymerase II transcription, nuclear mRNA splicing, via spliceosome, mRNA processing.
REACTOME_COMPLEX: Cleavage and Polyadenylation Complex [nucleoplasm] (REACT_3144), intronless pre-mRNA cleavage complex [nucleoplasm] (REACT_3895), Ligated exon containing complex [nucleoplasm] (REACT_5472), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), mRNA 3-end cleavage factor [nucleoplasm] (REACT_2642), Exon Junction Complex [nucleoplasm] (REACT_2984), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), CF II [nucleoplasm] (REACT_3772).
REACTOME_PATHWAY: mRNA Splicing (REACT_94469), Cleavage of Growing Transcript in the Termination Region (REACT_387), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Processing (REACT_29019), Processing of Intronless Pre-mRNAs (REACT_1096), mRNA 3-end processing (REACT_1849), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), Transcription (REACT_1788), mRNA Splicing - Major Pathway (REACT_467), Processing of Capped Intronless Pre-mRNA (REACT_1768), Gene Expression (REACT_71), RNA Polymerase II Transcription (REACT_1366), Post-Elongation Processing of the Transcript (REACT_78), Post-Elongation Processing of Intronless pre-mRNA (REACT_717), Post-Elongation Processing of Intron-Containing pre-mRNA (REACT_397), RNA Polymerase II Transcription (REACT_106213), Formation and Maturation of mRNA Transcript (REACT_2039), Transcription (REACT_34268), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), Post-Elongation Processing of the Transcript (REACT_108925), RNA Polymerase II Transcription Termination (REACT_53836), mRNA Splicing - Major Pathway (REACT_91611), Post-Elongation Processing of Intronless pre-mRNA (REACT_82898), RNA Polymerase II Transcription Termination (REACT_894), Cleavage of Growing Transcript in the Termination Region (REACT_33730), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), Processing of Capped Intronless Pre-mRNA (REACT_33642), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866), Processing of Intronless Pre-mRNAs (REACT_100138).
These properties come from phylome analysis
molecular_function: ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity, ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity, ATP binding, protein binding.
cellular_component: Golgi apparatus part, mRNA cleavage factor complex, nucleoplasm, tRNA-intron endonuclease complex, nucleus.
biological_process: hermaphrodite genitalia development, negative regulation of multicellular organism growth, positive regulation of growth rate, growth, siRNA loading onto RISC involved in RNA interference, mRNA 3'-end processing, targeting of mRNA for destruction involved in RNA interference, embryo development ending in birth or egg hatching, tRNA splicing, via endonucleolytic cleavage and ligation, mRNA cleavage, mRNA polyadenylation, termination of RNA polymerase II transcription, nematode larval development, nuclear mRNA splicing, via spliceosome, mRNA processing.
These properties come from kegg analysis
KEGG_ORTHOLOGS: polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] (K14399).
molecular_function: ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity, ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity.
