Protein coding gene MELO3C023741
Accession: MELO3C023741
Name: MELO3C023741
Description: Similar to DEAD-box ATP-dependent RNA helicase 21 (Arabidopsis thaliana) (uniprot_sprot:sp|P93008|RH21_ARATH)
Properties
These properties come from blast2go analysis
molecular_function: ATP-dependent helicase activity, ATP binding, nucleic acid binding.
cellular_component: cytoplasm, nucleus.
These properties come from reactome analysis
REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_81825), Formation of AT-AC B Complex (REACT_101559), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Formation of AT-AC C complex (REACT_83124), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Formation of AT-AC C complex (REACT_1615), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81731), Formation of the Spliceosomal B Complex (REACT_90182), Formation of AT-AC C complex (REACT_110048), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), Formation of AT-AC C complex (REACT_95722), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81096), Formation of the Spliceosomal B Complex (REACT_109266), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_34550), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_77961), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_1494), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Formation of an intermediate Spliceosomal C complex (REACT_91565), Formation of AT-AC B Complex (REACT_100957), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_2241), Formation of AT-AC B Complex (REACT_93825), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_29379), Formation of the active Spliceosomal C complex (REACT_63591), Formation of the Spliceosomal B Complex (REACT_48), Formation of AT-AC B Complex (REACT_1253), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).
biological_process: RNA splicing, gene expression, nuclear mRNA splicing, via spliceosome.
REACTOME_COMPLEX: ATAC C Complex [nucleoplasm] (REACT_4626), Exon Junction Complex [nucleoplasm] (REACT_2984), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), ATAC C Complex with lariat containing 5-end cleaved mRNA [nucleoplasm] (REACT_5134), Spliceosomal B Complex [nucleoplasm] (REACT_3078), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), U4 ATAC:U5:U6 ATAC Complex [nucleoplasm] (REACT_4539), U4:U5:U6 trisnRNP complex [nucleoplasm] (REACT_5066), U5 snRNP [nucleoplasm] (REACT_2482), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), ATAC B Complex [nucleoplasm] (REACT_5095), intron-containing complex [nucleoplasm] (REACT_3239).
REACTOME_PATHWAY: mRNA Splicing - Major Pathway (REACT_467), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Splicing (REACT_98879), mRNA Processing (REACT_29019), mRNA Splicing - Minor Pathway (REACT_91088), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), mRNA Splicing - Minor Pathway (REACT_101135), Formation and Maturation of mRNA Transcript (REACT_92291), Gene Expression (REACT_71), mRNA Processing (REACT_109337), Formation and Maturation of mRNA Transcript (REACT_2039), mRNA Splicing - Minor Pathway (REACT_101749), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), Processing of Capped Intron-Containing Pre-mRNA (REACT_109442), mRNA Splicing - Minor Pathway (REACT_1753), mRNA Splicing - Major Pathway (REACT_91611), Gene Expression (REACT_91657), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), mRNA Splicing (REACT_94469), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866).
These properties come from phylome analysis
molecular_function: ATPase activity, uncoupled, protein binding, ATP-dependent RNA helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding.
cellular_component: catalytic step 2 spliceosome, precatalytic spliceosome, U5 snRNP, nucleoplasm, cytoplasm, nucleus.
biological_process: developmental growth, regulation of cell proliferation, hermaphrodite genitalia development, hermaphrodite germ-line sex determination, regulation of meiosis, locomotion, embryonic body morphogenesis, embryo development ending in birth or egg hatching, germ cell development, nematode larval development, morphogenesis of an epithelium, nuclear mRNA splicing, via spliceosome, cis assembly of pre-catalytic spliceosome.
These properties come from kegg analysis
KEGG_ORTHOLOGS: ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13] (K12858).
COG: Superfamily II DNA and RNA helicases (COG0513).
