Polypeptide MELO3C023823P1

Accession: MELO3C023823P1

Name: MELO3C023823P1

Description: Similar to Splicing factor 3B subunit 3 (Mus musculus) (uniprot_sprot:sp|Q921M3|SF3B3_MOUSE)

Sequence:

>MELO3C023823P1 Similar to Splicing factor 3B subunit 3 (Mus musculus) (uniprot_sprot:sp|Q921M3|SF3B3_MOUSE)
MYLYSLTLQRATGIVSAINGNFSGGKTQEIVVARGKVLDLIRPDDSGKIQTLLSVEIFGAIRSLAQFRLTGSQKDYIVVG
SDSGRIVILEYNKDKNVFDKIHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAH
KSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGVAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQTEYGDIFKVTLEHNNDSVKE
LKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAIGEDADVESSSATLMETEEGFQPVFFQPRRLKNLMRIDQVE
SLMPIMDMKIINLFEEETPQIFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGE
LIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQILSVQSVSAAPESLLFL
EVLASVGGEDGADHPASLFLNAALHSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVVLRGRRAILCLSSRPWLGYIH
QGHFLLTPLSYETLEYASSFSSDQCAEGVVAVAGNFLRVFTIERLGETFNETVIPLRYTPRKFVLQPRRKLLVVIESDQG
AFTAEEREAARKECFEAAGAGENGNGTMEQMENGGDDEDKDDPLSDEHYGYPKAESEKWVSCIRVLDPRSATTTCLLELQ
DNEAAFSVCTVNFHDKEYGTLLAVGTAKGLQFFPKRSLVAGYIHIYRFLEDGKSLELLHKTQVEGVPLALAQFQGRLLAG
IGNVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDSVPRWLTASYHVDFD
TMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECILYGTV
MGSLGALHAFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMGYRSAYFPVKDVIDGDLCEQFPSLPLDMQRKIADELDRTPG
EILKKLEEVRNKII*

Download fasta sequence.

Properties

These properties come from blast2go analysis


molecular_function: nucleic acid binding.

cellular_component: nucleus.

biological_process: RNA processing.

These properties come from reactome analysis


REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_81825), Formation of AT-AC B Complex (REACT_101559), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Formation of the Spliceosomal A Complex (REACT_788), Formation of AT-AC C complex (REACT_83124), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Formation of AT-AC C complex (REACT_1615), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81731), Formation of the Spliceosomal B Complex (REACT_90182), Formation of AT-AC C complex (REACT_78819), Formation of AT-AC C complex (REACT_110048), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_99299), Formation of AT-AC C complex (REACT_95722), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_105023), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81096), Formation of the Spliceosomal B Complex (REACT_109266), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), Formation of AT-AC A complex (REACT_864), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_34550), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_77961), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_1494), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Formation of AT-AC B Complex (REACT_90655), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Formation of an intermediate Spliceosomal C complex (REACT_91565), Formation of AT-AC B Complex (REACT_100957), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_2241), Formation of AT-AC B Complex (REACT_93825), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_29379), Formation of the active Spliceosomal C complex (REACT_63591), Formation of the Spliceosomal B Complex (REACT_48), Formation of AT-AC B Complex (REACT_1253), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).

biological_process: gene expression, RNA splicing, nuclear mRNA splicing, via spliceosome.

REACTOME_COMPLEX: ATAC A Complex [nucleoplasm] (REACT_4037), SF3B [nucleoplasm] (REACT_3752), Spliceosomal A Complex [nucleoplasm] (REACT_4512), ATAC C Complex [nucleoplasm] (REACT_4626), Exon Junction Complex [nucleoplasm] (REACT_2984), ATAC C Complex with lariat containing 5-end cleaved mRNA [nucleoplasm] (REACT_5134), U2 snRNP [nucleoplasm] (REACT_3715), Spliceosomal B Complex [nucleoplasm] (REACT_3078), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), ATAC B Complex [nucleoplasm] (REACT_5095), U12 snRNP [nucleoplasm] (REACT_3595), intron-containing complex [nucleoplasm] (REACT_3239).

REACTOME_PATHWAY: mRNA Splicing - Major Pathway (REACT_467), Processing of Capped Intron-Containing Pre-mRNA (REACT_31128), mRNA Processing (REACT_94551), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Splicing (REACT_98879), mRNA Processing (REACT_29019), mRNA Splicing - Minor Pathway (REACT_91088), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), Formation and Maturation of mRNA Transcript (REACT_85219), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), Gene Expression (REACT_85241), mRNA Splicing - Minor Pathway (REACT_101135), Formation and Maturation of mRNA Transcript (REACT_92291), Gene Expression (REACT_71), mRNA Splicing (REACT_81581), mRNA Splicing - Minor Pathway (REACT_88186), mRNA Processing (REACT_109337), Processing of Capped Intron-Containing Pre-mRNA (REACT_109442), Formation and Maturation of mRNA Transcript (REACT_2039), mRNA Splicing - Minor Pathway (REACT_101749), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), mRNA Splicing - Minor Pathway (REACT_1753), mRNA Splicing - Major Pathway (REACT_91611), Gene Expression (REACT_91657), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), mRNA Splicing (REACT_94469), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866).

These properties come from phylome analysis


molecular_function: U2 snRNA binding, protein binding, nucleic acid binding.

cellular_component: catalytic step 2 spliceosome, precatalytic spliceosome, small nuclear ribonucleoprotein complex, chloroplast, U12-type spliceosomal complex, U2 snRNP, spliceosomal complex, nucleoplasm, nucleus.

biological_process: regulation of cell proliferation, hermaphrodite genitalia development, regulation of meiosis, growth, cell migration, embryo development ending in birth or egg hatching, gonad development, germ cell development, mitotic spindle organization, cell cycle, protein complex assembly, mRNA processing, nematode larval development, morphogenesis of an epithelium, gastrulation with mouth forming first, nuclear mRNA splicing, via spliceosome, RNA splicing, via transesterification reactions, spliceosome assembly.

These properties come from kegg analysis


KEGG_ORTHOLOGS: splicing factor 3B subunit 3 (K12830).

Locations

Located in CM3.5_scaffold00063 from 167876 to 172189.

This polypeptide in other databases

In PhylomeDB is Phy003A1XA_CUCME .

Related features