Protein coding gene MELO3C024822
Accession: MELO3C024822
Name: MELO3C024822
Description: Similar to Splicing factor 3B subunit 1 (Xenopus laevis) (uniprot_sprot:sp|O57683|SF3B1_XENLA)
Properties
These properties come from blast2go analysis
molecular_function: protein binding, chromatin binding.
cellular_component: nuclear speck, spliceosomal complex.
biological_process: anterior/posterior pattern formation, nuclear mRNA splicing, via spliceosome.
These properties come from reactome analysis
REACTOME_REACTION: Formation of an intermediate Spliceosomal C complex (REACT_625), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_81825), Formation of AT-AC B Complex (REACT_101559), Formation of an intermediate Spliceosomal C complex (REACT_108009), Formation of Exon Junction Complex (REACT_92827), Formation of the Spliceosomal A Complex (REACT_788), Formation of AT-AC C complex (REACT_83124), Lariat Formation and 5-Splice Site Cleavage (REACT_1935), Formation of AT-AC C complex (REACT_1615), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81731), Formation of the Spliceosomal B Complex (REACT_90182), Formation of AT-AC C complex (REACT_110048), Formation of the active Spliceosomal C complex (REACT_1554), Formation of the active Spliceosomal C complex (REACT_89446), Formation of AT-AC C complex (REACT_95722), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_81096), Formation of the Spliceosomal B Complex (REACT_109266), Lariat Formation and 5-Splice Site Cleavage (REACT_82009), Formation of AT-AC A complex (REACT_864), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_34550), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_77961), ATAC spliceosome mediated 3 splice site cleavage, exon ligation (REACT_1494), Formation of Exon Junction Complex (REACT_85923), Formation of Exon Junction Complex (REACT_774), Lariat Formation and 5-Splice Site Cleavage (REACT_28087), Formation of an intermediate Spliceosomal C complex (REACT_91565), Formation of AT-AC B Complex (REACT_100957), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_2241), Formation of AT-AC B Complex (REACT_93825), ATAC spliceosome mediated Lariat formation,5 splice site cleavage (REACT_29379), Formation of the active Spliceosomal C complex (REACT_63591), Formation of the Spliceosomal B Complex (REACT_48), Formation of AT-AC B Complex (REACT_1253), Cleavage at the 3-Splice Site and Exon Ligation (REACT_1331).
biological_process: RNA splicing, gene expression, nuclear mRNA splicing, via spliceosome.
REACTOME_COMPLEX: ATAC A Complex [nucleoplasm] (REACT_4037), SF3B [nucleoplasm] (REACT_3752), Spliceosomal A Complex [nucleoplasm] (REACT_4512), ATAC C Complex [nucleoplasm] (REACT_4626), Exon Junction Complex [nucleoplasm] (REACT_2984), ATAC C Complex with lariat containing 5-end cleaved mRNA [nucleoplasm] (REACT_5134), U2 snRNP [nucleoplasm] (REACT_3715), Spliceosomal B Complex [nucleoplasm] (REACT_3078), Spliceosomal Intermediate C Complex [nucleoplasm] (REACT_5473), Spliceosomal Active C Complex [nucleoplasm] (REACT_2680), Spliceosomal active C complex with lariat containing, 5-end cleaved pre-mRNP:CBC complex [nucleoplasm] (REACT_5191), ATAC B Complex [nucleoplasm] (REACT_5095), U12 snRNP [nucleoplasm] (REACT_3595), intron-containing complex [nucleoplasm] (REACT_3239).
REACTOME_PATHWAY: mRNA Splicing - Major Pathway (REACT_467), Formation and Maturation of mRNA Transcript (REACT_77979), mRNA Splicing (REACT_98879), mRNA Processing (REACT_29019), mRNA Splicing - Minor Pathway (REACT_91088), Processing of Capped Intron-Containing Pre-mRNA (REACT_29012), mRNA Processing (REACT_1675), mRNA Splicing (REACT_1735), mRNA Splicing - Minor Pathway (REACT_101135), Formation and Maturation of mRNA Transcript (REACT_92291), Gene Expression (REACT_71), mRNA Processing (REACT_109337), Formation and Maturation of mRNA Transcript (REACT_2039), mRNA Splicing - Minor Pathway (REACT_101749), Gene Expression (REACT_108313), Processing of Capped Intron-Containing Pre-mRNA (REACT_125), Processing of Capped Intron-Containing Pre-mRNA (REACT_109442), mRNA Splicing - Minor Pathway (REACT_1753), mRNA Splicing - Major Pathway (REACT_91611), Gene Expression (REACT_91657), mRNA Splicing (REACT_107931), Processing of Capped Intron-Containing Pre-mRNA (REACT_82582), mRNA Splicing - Major Pathway (REACT_93740), Gene Expression (REACT_105649), mRNA Splicing (REACT_94469), Formation and Maturation of mRNA Transcript (REACT_32779), mRNA Processing (REACT_80866).
These properties come from phylome analysis
molecular_function: binding, mRNA binding, protein binding.
cellular_component: catalytic step 2 spliceosome, precatalytic spliceosome, chloroplast, U12-type spliceosomal complex, U2 snRNP, nuclear speck, spliceosomal complex.
biological_process: regulation of cell proliferation, hermaphrodite genitalia development, regulation of meiosis, locomotion, positive regulation of growth rate, growth, embryo development ending in birth or egg hatching, determination of adult lifespan, germ cell development, receptor-mediated endocytosis, nematode larval development, spliceosome assembly, nuclear mRNA splicing, via spliceosome.
These properties come from kegg analysis
KEGG_ORTHOLOGS: splicing factor 3B subunit 1 (K12828).
